PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022234m
Common NameCICLE_v10021488mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 212aa    MW: 22677.9 Da    PI: 6.4836
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022234mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.4e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Ciclev10022234m  4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAAnklaskHQRVPL 47
                     6******99*********************66899999999986 PP

2zf-B_box28.43.4e-095394237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++kC+ ++e    +fC +++ llC++C +++H        H
  Ciclev10022234m 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnsyvsaH 94
                     799*******99*********************554555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000211.83E-7347No hitNo description
SMARTSM003366.9E-10447IPR000315B-box-type zinc finger
PfamPF006433.0E-5447IPR000315B-box-type zinc finger
SuperFamilySSF578457.78E-54594No hitNo description
PROSITE profilePS501198.9445299IPR000315B-box-type zinc finger
SMARTSM003368.2E-155299IPR000315B-box-type zinc finger
PfamPF006431.0E-65394IPR000315B-box-type zinc finger
CDDcd000211.41E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRIQCNVCEA AEAKVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS STQMPKCDIC  60
QETSGFFFCL QDRALLCRKC DVAIHTANSY VSAHQRFLLT GVKVGLEPAD PGASSSSIKS  120
LSGENILDMK SHSLSRRDAL MPVAAECKEV LPASSGGVGD FAMNKVSFAG GSAAGSTPSW  180
HMDDFLALPE LNQNYSFMDN GSSKLIYLKI C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.77010.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827007e-43AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442352.11e-156hypothetical protein CICLE_v10021488mg
SwissprotQ9SYM22e-74BBX22_ARATH; B-box zinc finger protein 22
TrEMBLV4TQ781e-156V4TQ78_9R
STRINGPGSC0003DMT4000181961e-100(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.22e-74light-regulated zinc finger protein 1